J7_4V6O_001

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

CGACUAAGCG*CGUACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

39 nucleotides

Bulged bases

4V6O|1|BB|C|2021, 4V6O|1|BB|U|2022

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6O|1|BB|C|8
4V6O|1|BB|G|9
4V6O|1|BB|A|10
4V6O|1|BB|C|11
4V6O|1|BB|U|12
4V6O|1|BB|A|13
4V6O|1|BB|A|14
4V6O|1|BB|G|15
4V6O|1|BB|C|16
4V6O|1|BB|G|17
*
4V6O|1|BB|C|523
4V6O|1|BB|G|524
4V6O|1|BB|U|525
4V6O|1|BB|A|526
4V6O|1|BB|C|527
4V6O|1|BB|A|528
4V6O|1|BB|A|529
4V6O|1|BB|G|530
4V6O|1|BB|C|531
*
4V6O|1|BB|G|2018
4V6O|1|BB|A|2019
4V6O|1|BB|A|2020
4V6O|1|BB|C|2021
4V6O|1|BB|U|2022
4V6O|1|BB|C|2023
*
4V6O|1|BB|G|2040
4V6O|1|BB|U|2041
4V6O|1|BB|A|2042
4V6O|1|BB|C|2043
*
4V6O|1|BB|G|2625
4V6O|1|BB|C|2626
4V6O|1|BB|G|2627
4V6O|1|BB|C|2628
4V6O|1|BB|U|2629
4V6O|1|BB|G|2630
*
4V6O|1|BB|C|2788
4V6O|1|BB|C|2789
*
4V6O|1|BB|G|2894
4V6O|1|BB|G|2895

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L32

Chain BE

50S ribosomal protein L3

Chain BL

50S ribosomal protein L13

Chain BS

50S ribosomal protein L20

Chain BT

50S ribosomal protein L21

Chain BU

50S ribosomal protein L22