3D structure

PDB id
4V6P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
4V6P|1|BB|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V6P|1|BB|C|817
4V6P|1|BB|G|818
4V6P|1|BB|A|819
4V6P|1|BB|A|820
4V6P|1|BB|A|821
4V6P|1|BB|G|822
*
4V6P|1|BB|C|835
4V6P|1|BB|G|836
4V6P|1|BB|C|837
4V6P|1|BB|C|838
*
4V6P|1|BB|G|940
4V6P|1|BB|A|941
4V6P|1|BB|G|942
4V6P|1|BB|A|943
4V6P|1|BB|C|944
4V6P|1|BB|A|945
4V6P|1|BB|C|946
*
4V6P|1|BB|G|971
4V6P|1|BB|A|972
4V6P|1|BB|A|973
4V6P|1|BB|G|974
4V6P|1|BB|A|975
4V6P|1|BB|G|976
*
4V6P|1|BB|C|987
4V6P|1|BB|A|988
4V6P|1|BB|G|989
4V6P|1|BB|A|990
4V6P|1|BB|C|991
*
4V6P|1|BB|G|1163
4V6P|1|BB|C|1164
*
4V6P|1|BB|G|1185
4V6P|1|BB|G|1186
4V6P|1|BB|G|1187
4V6P|1|BB|U|1188
4V6P|1|BB|A|1189
4V6P|1|BB|G|1190

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain B1
50S ribosomal protein L30
Chain B6
50S ribosomal protein L35
Chain BA
5S ribosomal RNA; 5S rRNA
Chain BN
50S ribosomal protein L15
Chain BS
50S ribosomal protein L20
Chain BT
50S ribosomal protein L21

Coloring options:

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