J7_4V6Q_001

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

4V6Q|1|BB|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6Q|1|BB|C|8
4V6Q|1|BB|G|9
4V6Q|1|BB|A|10
4V6Q|1|BB|C|11
4V6Q|1|BB|U|12
4V6Q|1|BB|A|13
4V6Q|1|BB|A|14
4V6Q|1|BB|G|15
*
4V6Q|1|BB|U|525
4V6Q|1|BB|A|526
4V6Q|1|BB|C|527
4V6Q|1|BB|A|528
4V6Q|1|BB|A|529
4V6Q|1|BB|G|530
4V6Q|1|BB|C|531
*
4V6Q|1|BB|G|2018
4V6Q|1|BB|A|2019
4V6Q|1|BB|A|2020
4V6Q|1|BB|C|2021
4V6Q|1|BB|U|2022
4V6Q|1|BB|C|2023
*
4V6Q|1|BB|G|2040
4V6Q|1|BB|U|2041
4V6Q|1|BB|A|2042
4V6Q|1|BB|C|2043
*
4V6Q|1|BB|G|2625
4V6Q|1|BB|C|2626
4V6Q|1|BB|G|2627
4V6Q|1|BB|C|2628
4V6Q|1|BB|U|2629
4V6Q|1|BB|G|2630
*
4V6Q|1|BB|C|2788
4V6Q|1|BB|C|2789
*
4V6Q|1|BB|G|2894
4V6Q|1|BB|G|2895

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L32

Chain BE

50S ribosomal protein L3

Chain BL

50S ribosomal protein L13

Chain BS

50S ribosomal protein L20

Chain BU

50S ribosomal protein L22