J7_4V6S_002

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GCA*UGGGUAG

Length

38 nucleotides

Bulged bases

4V6S|1|AB|A|945

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6S|1|AB|C|817
4V6S|1|AB|G|818
4V6S|1|AB|A|819
4V6S|1|AB|A|820
4V6S|1|AB|A|821
4V6S|1|AB|G|822
*
4V6S|1|AB|C|835
4V6S|1|AB|G|836
4V6S|1|AB|C|837
4V6S|1|AB|C|838
*
4V6S|1|AB|G|940
4V6S|1|AB|A|941
4V6S|1|AB|G|942
4V6S|1|AB|A|943
4V6S|1|AB|C|944
4V6S|1|AB|A|945
4V6S|1|AB|C|946
*
4V6S|1|AB|G|971
4V6S|1|AB|A|972
4V6S|1|AB|A|973
4V6S|1|AB|G|974
4V6S|1|AB|A|975
4V6S|1|AB|G|976
*
4V6S|1|AB|C|987
4V6S|1|AB|A|988
4V6S|1|AB|G|989
4V6S|1|AB|A|990
4V6S|1|AB|C|991
*
4V6S|1|AB|G|1163
4V6S|1|AB|C|1164
4V6S|1|AB|A|1165
*
4V6S|1|AB|U|1184
4V6S|1|AB|G|1185
4V6S|1|AB|G|1186
4V6S|1|AB|G|1187
4V6S|1|AB|U|1188
4V6S|1|AB|A|1189
4V6S|1|AB|G|1190

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L30

Chain A6

50S ribosomal protein L35

Chain AA

5S ribosomal RNA; 5S rRNA

Chain AN

50S ribosomal protein L15

Chain AS

50S ribosomal protein L20

Chain AT

50S ribosomal protein L21