J7_4V6T_001

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

4V6T|1|BA|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6T|1|BA|C|8
4V6T|1|BA|G|9
4V6T|1|BA|A|10
4V6T|1|BA|C|11
4V6T|1|BA|U|12
4V6T|1|BA|A|13
4V6T|1|BA|A|14
4V6T|1|BA|G|15
*
4V6T|1|BA|U|525
4V6T|1|BA|A|526
4V6T|1|BA|C|527
4V6T|1|BA|A|528
4V6T|1|BA|A|529
4V6T|1|BA|G|530
4V6T|1|BA|C|531
*
4V6T|1|BA|G|2018
4V6T|1|BA|A|2019
4V6T|1|BA|A|2020
4V6T|1|BA|C|2021
4V6T|1|BA|U|2022
4V6T|1|BA|C|2023
*
4V6T|1|BA|G|2040
4V6T|1|BA|U|2041
4V6T|1|BA|A|2042
4V6T|1|BA|C|2043
*
4V6T|1|BA|G|2625
4V6T|1|BA|C|2626
4V6T|1|BA|G|2627
4V6T|1|BA|C|2628
4V6T|1|BA|U|2629
4V6T|1|BA|G|2630
*
4V6T|1|BA|C|2788
4V6T|1|BA|C|2789
*
4V6T|1|BA|G|2894
4V6T|1|BA|G|2895

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BD

50S ribosomal protein L3

Chain BJ

50S ribosomal protein L13

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22