3D structure

PDB id
4V6V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracycline resistance protein Tet(O) bound to the ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
9.8 Å

Loop

Sequence
CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length
35 nucleotides
Bulged bases
4V6V|1|BA|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V6V|1|BA|C|8
4V6V|1|BA|G|9
4V6V|1|BA|A|10
4V6V|1|BA|C|11
4V6V|1|BA|U|12
4V6V|1|BA|A|13
4V6V|1|BA|A|14
4V6V|1|BA|G|15
*
4V6V|1|BA|U|525
4V6V|1|BA|A|526
4V6V|1|BA|C|527
4V6V|1|BA|A|528
4V6V|1|BA|A|529
4V6V|1|BA|G|530
4V6V|1|BA|C|531
*
4V6V|1|BA|G|2018
4V6V|1|BA|A|2019
4V6V|1|BA|A|2020
4V6V|1|BA|C|2021
4V6V|1|BA|U|2022
4V6V|1|BA|C|2023
*
4V6V|1|BA|G|2040
4V6V|1|BA|U|2041
4V6V|1|BA|A|2042
4V6V|1|BA|C|2043
*
4V6V|1|BA|G|2625
4V6V|1|BA|C|2626
4V6V|1|BA|G|2627
4V6V|1|BA|C|2628
4V6V|1|BA|U|2629
4V6V|1|BA|G|2630
*
4V6V|1|BA|C|2788
4V6V|1|BA|C|2789
*
4V6V|1|BA|G|2894
4V6V|1|BA|G|2895

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B5
50S ribosomal protein L32
Chain BE
50S ribosomal protein L3
Chain BN
50S ribosomal protein L13
Chain BU
50S ribosomal protein L20
Chain BV
50S ribosomal protein L21
Chain BW
50S ribosomal protein L22

Coloring options:

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