J7_4V7E_001
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GGAAG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 4V7E|1|Aa|G|1119, 4V7E|1|Aa|A|1162
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V7E|1|Aa|C|952
4V7E|1|Aa|G|953
4V7E|1|Aa|A|954
4V7E|1|Aa|A|955
4V7E|1|Aa|G|956
4V7E|1|Aa|U|957
*
4V7E|1|Aa|A|970
4V7E|1|Aa|G|971
*
4V7E|1|Aa|U|1117
4V7E|1|Aa|G|1118
4V7E|1|Aa|G|1119
4V7E|1|Aa|G|1120
*
4V7E|1|Aa|C|1144
4V7E|1|Aa|G|1145
4V7E|1|Aa|A|1146
4V7E|1|Aa|U|1147
4V7E|1|Aa|G|1148
4V7E|1|Aa|C|1149
*
4V7E|1|Aa|G|1160
4V7E|1|Aa|G|1161
4V7E|1|Aa|A|1162
4V7E|1|Aa|A|1163
4V7E|1|Aa|G|1164
*
4V7E|1|Aa|C|1342
4V7E|1|Aa|C|1343
*
4V7E|1|Aa|G|1369
4V7E|1|Aa|A|1370
4V7E|1|Aa|G|1371
4V7E|1|Aa|U|1372
4V7E|1|Aa|A|1373
4V7E|1|Aa|G|1374
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain Ab
- 5S ribosomal RNA; 5S rRNA
- Chain CC
- 60S ribosomal protein L4
- Chain CF
- 60S ribosomal protein L30
- Chain CL
- 60S ribosomal protein L13E
- Chain CQ
- 60S ribosomal protein L18E
- Chain CT
- 60S ribosomal protein L21E
- Chain Ca
- 60S ribosomal protein L15
- Chain Cb
- 60S ribosomal protein L29E
- Chain Ce
- 60S ribosomal protein L32E
- Chain Cf
- 60S ribosomal protein L33E
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