J7_4V7I_001

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

4V7I|1|A8|A|10, 4V7I|1|A8|G|530, 4V7I|1|A8|C|2021, 4V7I|1|A8|U|2022

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7I|1|A8|C|8
4V7I|1|A8|G|9
4V7I|1|A8|A|10
4V7I|1|A8|C|11
4V7I|1|A8|U|12
4V7I|1|A8|A|13
4V7I|1|A8|A|14
4V7I|1|A8|G|15
*
4V7I|1|A8|U|525
4V7I|1|A8|A|526
4V7I|1|A8|C|527
4V7I|1|A8|A|528
4V7I|1|A8|A|529
4V7I|1|A8|G|530
4V7I|1|A8|C|531
*
4V7I|1|A8|G|2018
4V7I|1|A8|A|2019
4V7I|1|A8|A|2020
4V7I|1|A8|C|2021
4V7I|1|A8|U|2022
4V7I|1|A8|C|2023
*
4V7I|1|A8|G|2040
4V7I|1|A8|U|2041
4V7I|1|A8|A|2042
4V7I|1|A8|C|2043
*
4V7I|1|A8|G|2625
4V7I|1|A8|C|2626
4V7I|1|A8|G|2627
4V7I|1|A8|C|2628
4V7I|1|A8|U|2629
4V7I|1|A8|G|2630
*
4V7I|1|A8|C|2788
4V7I|1|A8|C|2789
*
4V7I|1|A8|G|2894
4V7I|1|A8|G|2895

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain A0

50S ribosomal protein L32

Chain AD

50S ribosomal protein L3

Chain AJ

50S ribosomal protein L13

Chain AQ

50S ribosomal protein L20

Chain AS

50S ribosomal protein L22