3D structure

PDB id
4V7I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ribosome-SecY complex.
Experimental method
ELECTRON MICROSCOPY
Resolution
9.6 Å

Loop

Sequence
CGAAAG*CGC*GACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
33 nucleotides
Bulged bases
4V7I|1|A8|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V7I|1|A8|C|817
4V7I|1|A8|G|818
4V7I|1|A8|A|819
4V7I|1|A8|A|820
4V7I|1|A8|A|821
4V7I|1|A8|G|822
*
4V7I|1|A8|C|835
4V7I|1|A8|G|836
4V7I|1|A8|C|837
*
4V7I|1|A8|G|942
4V7I|1|A8|A|943
4V7I|1|A8|C|944
4V7I|1|A8|A|945
4V7I|1|A8|C|946
*
4V7I|1|A8|G|971
4V7I|1|A8|A|972
4V7I|1|A8|A|973
4V7I|1|A8|G|974
4V7I|1|A8|A|975
4V7I|1|A8|G|976
*
4V7I|1|A8|C|987
4V7I|1|A8|A|988
4V7I|1|A8|G|989
4V7I|1|A8|A|990
4V7I|1|A8|C|991
*
4V7I|1|A8|G|1163
4V7I|1|A8|C|1164
*
4V7I|1|A8|G|1185
4V7I|1|A8|G|1186
4V7I|1|A8|G|1187
4V7I|1|A8|U|1188
4V7I|1|A8|A|1189
4V7I|1|A8|G|1190

Current chains

Chain A8
23S ribosomal RNA

Nearby chains

Chain A3
50S ribosomal protein L35
Chain A7
5S ribosomal RNA; 5S rRNA
Chain AL
50S ribosomal protein L15
Chain AQ
50S ribosomal protein L20
Chain AR
50S ribosomal protein L21
Chain AZ
50S ribosomal protein L30

Coloring options:

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