J7_4V8E_001

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

4V8E|1|AA|G|530, 4V8E|1|AA|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8E|1|AA|A|8
4V8E|1|AA|U|9
4V8E|1|AA|G|10
4V8E|1|AA|G|11
4V8E|1|AA|U|12
4V8E|1|AA|A|13
4V8E|1|AA|A|14
4V8E|1|AA|G|15
*
4V8E|1|AA|U|525
4V8E|1|AA|A|526
4V8E|1|AA|C|527
4V8E|1|AA|A|528
4V8E|1|AA|A|529
4V8E|1|AA|G|530
4V8E|1|AA|C|531
*
4V8E|1|AA|G|2018
4V8E|1|AA|A|2019
4V8E|1|AA|A|2020
4V8E|1|AA|C|2021
4V8E|1|AA|U|2022
4V8E|1|AA|G|2023
*
4V8E|1|AA|C|2040
4V8E|1|AA|U|2041
4V8E|1|AA|A|2042
4V8E|1|AA|C|2043
*
4V8E|1|AA|G|2625
4V8E|1|AA|C|2626
4V8E|1|AA|G|2627
4V8E|1|AA|C|2628
4V8E|1|AA|A|2629
4V8E|1|AA|G|2630
*
4V8E|1|AA|C|2788
4V8E|1|AA|C|2789
*
4V8E|1|AA|G|2894
4V8E|1|AA|U|2895

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain A1

50S ribosomal protein L20

Chain A5

50S ribosomal protein L32

Chain AE

50S ribosomal protein L3

Chain AM

50S ribosomal protein L13

Chain AS

50S ribosomal protein L22