J7_4V8E_003

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

4V8E|1|CA|C|2044

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8E|1|CA|A|8
4V8E|1|CA|U|9
4V8E|1|CA|G|10
4V8E|1|CA|G|11
4V8E|1|CA|U|12
4V8E|1|CA|A|13
4V8E|1|CA|A|14
4V8E|1|CA|G|15
*
4V8E|1|CA|U|551
4V8E|1|CA|A|552
4V8E|1|CA|C|553
4V8E|1|CA|A|554
4V8E|1|CA|A|555
4V8E|1|CA|G|556
4V8E|1|CA|C|557
*
4V8E|1|CA|G|2041
4V8E|1|CA|A|2042
4V8E|1|CA|A|2043
4V8E|1|CA|C|2044
4V8E|1|CA|U|2045
4V8E|1|CA|G|2046
*
4V8E|1|CA|C|2063
4V8E|1|CA|U|2064
4V8E|1|CA|A|2065
4V8E|1|CA|C|2066
*
4V8E|1|CA|G|2638
4V8E|1|CA|C|2639
4V8E|1|CA|G|2640
4V8E|1|CA|C|2641
4V8E|1|CA|A|2642
4V8E|1|CA|G|2643
*
4V8E|1|CA|C|2802
4V8E|1|CA|C|2803
*
4V8E|1|CA|G|2904
4V8E|1|CA|U|2905

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C1

50S ribosomal protein L20

Chain C5

50S ribosomal protein L32

Chain CE

50S ribosomal protein L3

Chain CM

50S ribosomal protein L13

Chain CS

50S ribosomal protein L22