J7_4V8E_005
3D structure
- PDB id
- 4V8E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG
- Length
- 32 nucleotides
- Bulged bases
- 4V8E|1|CA|A|991, 4V8E|1|CA|C|1021
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8E|1|CA|C|865
4V8E|1|CA|G|866
4V8E|1|CA|A|867
4V8E|1|CA|A|868
4V8E|1|CA|A|869
4V8E|1|CA|U|870
*
4V8E|1|CA|A|883
4V8E|1|CA|G|884
*
4V8E|1|CA|U|989
4V8E|1|CA|G|990
4V8E|1|CA|A|991
4V8E|1|CA|G|992
*
4V8E|1|CA|C|1017
4V8E|1|CA|G|1018
4V8E|1|CA|A|1019
4V8E|1|CA|G|1020
4V8E|1|CA|C|1021
4V8E|1|CA|G|1022
4V8E|1|CA|C|1023
*
4V8E|1|CA|G|1034
4V8E|1|CA|A|1035
4V8E|1|CA|G|1036
4V8E|1|CA|A|1037
4V8E|1|CA|C|1038
*
4V8E|1|CA|G|1210
4V8E|1|CA|G|1211
*
4V8E|1|CA|C|1231
4V8E|1|CA|G|1232
4V8E|1|CA|G|1233
4V8E|1|CA|U|1234
4V8E|1|CA|A|1235
4V8E|1|CA|G|1236
Current chains
- Chain CA
- RNA (2912-MER)
Nearby chains
- Chain C1
- 50S ribosomal protein L20
- Chain C2
- 50S ribosomal protein L21
- Chain C8
- 50S ribosomal protein L35
- Chain CB
- 5S ribosomal RNA; 5S rRNA
- Chain CO
- 50S ribosomal protein L15
- Chain CX
- 50S ribosomal protein L30
Coloring options: