J7_4V8P_002
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGA*UAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 4V8P|1|D1|G|1143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8P|1|D1|C|974
4V8P|1|D1|G|975
4V8P|1|D1|A|976
4V8P|1|D1|A|977
4V8P|1|D1|G|978
4V8P|1|D1|U|979
*
4V8P|1|D1|A|992
4V8P|1|D1|G|993
*
4V8P|1|D1|U|1141
4V8P|1|D1|G|1142
4V8P|1|D1|G|1143
4V8P|1|D1|G|1144
*
4V8P|1|D1|C|1168
4V8P|1|D1|G|1169
4V8P|1|D1|A|1170
4V8P|1|D1|U|1171
4V8P|1|D1|G|1172
4V8P|1|D1|A|1173
*
4V8P|1|D1|U|1184
4V8P|1|D1|A|1185
4V8P|1|D1|A|1186
4V8P|1|D1|C|1187
4V8P|1|D1|G|1188
*
4V8P|1|D1|C|1365
4V8P|1|D1|C|1366
*
4V8P|1|D1|G|1392
4V8P|1|D1|A|1393
4V8P|1|D1|G|1394
4V8P|1|D1|U|1395
4V8P|1|D1|A|1396
4V8P|1|D1|G|1397
Current chains
- Chain D1
- 26S RRNA
Nearby chains
- Chain C3
- 5S ribosomal RNA; 5S rRNA
- Chain CC
- RPL4
- Chain CK
- 60S RIBOSOMAL PROTEIN L27A
- Chain CN
- RPL18
- Chain CP
- 60S RIBOSOMAL PROTEIN L21
- Chain CV
- 60S RIBOSOMAL PROTEIN L7
- Chain CX
- 60S RIBOSOMAL PROTEIN L32
- Chain DH
- RPL35A
- Chain DT
- RPL29
- Chain DU
- RPL13
Coloring options: