3D structure

PDB id
4V91 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
Length
31 nucleotides
Bulged bases
4V91|1|1|G|1115, 4V91|1|1|G|1116
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V91|1|1|C|949
4V91|1|1|G|950
4V91|1|1|A|951
4V91|1|1|A|952
4V91|1|1|G|953
4V91|1|1|U|954
*
4V91|1|1|A|967
4V91|1|1|G|968
*
4V91|1|1|U|1114
4V91|1|1|G|1115
4V91|1|1|G|1116
4V91|1|1|G|1117
*
4V91|1|1|C|1141
4V91|1|1|G|1142
4V91|1|1|A|1143
4V91|1|1|U|1144
4V91|1|1|G|1145
4V91|1|1|C|1146
*
4V91|1|1|G|1157
4V91|1|1|A|1158
4V91|1|1|A|1159
4V91|1|1|C|1160
4V91|1|1|G|1161
*
4V91|1|1|C|1338
4V91|1|1|C|1339
*
4V91|1|1|G|1365
4V91|1|1|A|1366
4V91|1|1|G|1367
4V91|1|1|U|1368
4V91|1|1|A|1369
4V91|1|1|G|1370

Current chains

Chain 1
25S RRNA

Nearby chains

Chain 3
5S ribosomal RNA; 5S rRNA
Chain C
UL4
Chain F
UL30
Chain L
EL13
Chain Q
EL18
Chain T
EL21
Chain a
UL15
Chain b
EL29
Chain e
EL32
Chain f
EL33

Coloring options:

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