J7_4V9I_001
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG
- Length
- 32 nucleotides
- Bulged bases
- 4V9I|1|BA|A|989, 4V9I|1|BA|C|1019
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V9I|1|BA|C|863
4V9I|1|BA|G|864
4V9I|1|BA|A|865
4V9I|1|BA|A|866
4V9I|1|BA|A|867
4V9I|1|BA|U|868
*
4V9I|1|BA|A|881
4V9I|1|BA|G|882
*
4V9I|1|BA|U|987
4V9I|1|BA|G|988
4V9I|1|BA|A|989
4V9I|1|BA|G|990
*
4V9I|1|BA|C|1015
4V9I|1|BA|G|1016
4V9I|1|BA|A|1017
4V9I|1|BA|G|1018
4V9I|1|BA|C|1019
4V9I|1|BA|G|1020
4V9I|1|BA|C|1021
*
4V9I|1|BA|G|1032
4V9I|1|BA|A|1033
4V9I|1|BA|G|1034
4V9I|1|BA|A|1035
4V9I|1|BA|C|1036
*
4V9I|1|BA|G|1208
4V9I|1|BA|G|1209
*
4V9I|1|BA|C|1229
4V9I|1|BA|G|1230
4V9I|1|BA|G|1231
4V9I|1|BA|U|1232
4V9I|1|BA|A|1233
4V9I|1|BA|G|1234
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B3
- 50S ribosomal protein L30
- Chain B8
- 50S ribosomal protein L35
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain BP
- 50S ribosomal protein L15
- Chain BU
- 50S ribosomal protein L20
- Chain BV
- 50S ribosomal protein L21
Coloring options: