J7_4W21_001

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAGUUUC*GAUAG*UGGG*CGCUGCG*CGAACGCC*GGCCGUC*GACGAGUAG

Length

49 nucleotides

Bulged bases

4W21|1|5|G|1854

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W21|1|5|C|1666
4W21|1|5|G|1667
4W21|1|5|A|1668
4W21|1|5|A|1669
4W21|1|5|G|1670
4W21|1|5|U|1671
4W21|1|5|U|1672
4W21|1|5|U|1673
4W21|1|5|C|1674
*
4W21|1|5|G|1681
4W21|1|5|A|1682
4W21|1|5|U|1683
4W21|1|5|A|1684
4W21|1|5|G|1685
*
4W21|1|5|U|1852
4W21|1|5|G|1853
4W21|1|5|G|1854
4W21|1|5|G|1855
*
4W21|1|5|C|1879
4W21|1|5|G|1880
4W21|1|5|C|1881
4W21|1|5|U|1882
4W21|1|5|G|1883
4W21|1|5|C|1884
4W21|1|5|G|1885
*
4W21|1|5|C|1894
4W21|1|5|G|1895
4W21|1|5|A|1896
4W21|1|5|A|1897
4W21|1|5|C|1898
4W21|1|5|G|1899
4W21|1|5|C|1900
4W21|1|5|C|1901
*
4W21|1|5|G|2075
4W21|1|5|G|2076
4W21|1|5|C|2077
4W21|1|5|C|2078
4W21|1|5|G|2079
4W21|1|5|U|2080
4W21|1|5|C|2081
*
4W21|1|5|G|2275
4W21|1|5|A|2276
4W21|1|5|C|2277
4W21|1|5|G|2278
4W21|1|5|A|2279
4W21|1|5|G|2280
4W21|1|5|U|2281
4W21|1|5|A|2282
4W21|1|5|G|2283

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA