J7_4WF9_001

3D structure

PDB id

4WF9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

UUAUUAAG*UACAAGU*AUAGUA*UUAC*GCGUAG*CC*GA

Length

35 nucleotides

Bulged bases

4WF9|1|X|G|575, 4WF9|1|X|G|2048

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J7_30280.5

Basepair signature

cWW-tWH-cWW-F-F-cWW-tWH-cSH-F-cWW-F-F-tSS-cWW-F-F-F-tHW-cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4WF9|1|X|U|8
4WF9|1|X|U|9
4WF9|1|X|A|10
4WF9|1|X|U|11
4WF9|1|X|U|12
4WF9|1|X|A|13
4WF9|1|X|A|14
4WF9|1|X|G|15
*
4WF9|1|X|U|570
4WF9|1|X|A|571
4WF9|1|X|C|572
4WF9|1|X|A|573
4WF9|1|X|A|574
4WF9|1|X|G|575
4WF9|1|X|U|576
*
4WF9|1|X|A|2045
4WF9|1|X|U|2046
4WF9|1|X|A|2047
4WF9|1|X|G|2048
4WF9|1|X|U|2049
4WF9|1|X|A|2050
*
4WF9|1|X|U|2067
4WF9|1|X|U|2068
4WF9|1|X|A|2069
4WF9|1|X|C|2070
*
4WF9|1|X|G|2652
4WF9|1|X|C|2653
4WF9|1|X|G|2654
4WF9|1|X|U|2655
4WF9|1|X|A|2656
4WF9|1|X|G|2657
*
4WF9|1|X|C|2815
4WF9|1|X|C|2816
*
4WF9|1|X|G|2913
4WF9|1|X|A|2914

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain N

50S ribosomal protein L20

Chain O

50S ribosomal protein L21

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32