Motif J7_30280.5 Version J7_30280.5 of this group appears in releases 3.91 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | break | 15 | 16 | 17 | 18 | 19 | break | 20 | 21 | 22 | 23 | break | 24 | 25 | 26 | 27 | 28 | 29 | break | 30 | 31 | break | 32 | 33 | 1-33 | 2-28 | 5-10 | 6-7 | 8-9 | 10-24 | 13-21 | 14-15 | 19-20 | 23-24 | 29-30 | 31-32 | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J7_9DFE_001 | 9DFE | 0.1364 | 2 | 1A | LSU rRNA | A | 8 | U | 9 | G | 10 | G | 11 | U | 12 | A | 13 | A | 14 | G | 15 | * | U | 525 | A | 526 | C | 527 | A | 528 | A | 529 | C | 531 | * | G | 2018 | A | 2019 | A | 2020 | U | 2022 | G | 2023 | * | C | 2040 | U | 2041 | A | 2042 | C | 2043 | * | G | 2625 | C | 2626 | G | 2627 | C | 2628 | A | 2629 | G | 2630 | * | C | 2788 | C | 2789 | * | G | 2894 | U | 2895 | cWW | ntWH | cSH | cWW | ntSs | tHW | cWW | cWW | cWW | cWW | cWW | |
| 2 | J7_4WF9_001 | 4WF9 | 0.0000 | 2 | X | LSU rRNA | U | 8 | U | 9 | A | 10 | U | 11 | U | 12 | A | 13 | A | 14 | G | 15 | * | U | 570 | A | 571 | C | 572 | A | 573 | A | 574 | U | 576 | * | A | 2045 | U | 2046 | A | 2047 | U | 2049 | A | 2050 | * | U | 2067 | U | 2068 | A | 2069 | C | 2070 | * | G | 2652 | C | 2653 | G | 2654 | U | 2655 | A | 2656 | G | 2657 | * | C | 2815 | C | 2816 | * | G | 2913 | A | 2914 | cWW | tWH | tWH | cSH | cWW | ntSs | tHW | cWW | cWW | cWW | cWW | cWW |
| 3 | J7_7A0S_001 | 7A0S | 0.0983 | 2 | X | LSU rRNA | A | 8 | U | 9 | A | 10 | G | 11 | U | 12 | A | 13 | A | 14 | G | 15 | * | U | 535 | A | 536 | C | 537 | A | 538 | A | 539 | C | 541 | * | G | 2001 | A | 2002 | A | 2003 | U | 2005 | G | 2006 | * | C | 2023 | U | 2024 | A | 2025 | C | 2026 | * | G | 2604 | C | 2605 | G | 2606 | C | 2607 | A | 2608 | G | 2609 | * | C | 2768 | C | 2769 | * | G | 2868 | U | 2869 | cWW | tWH | cSH | cWW | tSs | tHW | cWW | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAGCCGU | 1 |
| UUAUUAAG*UACAAGU*AUAGUA*UUAC*GCGUAGCCGA | 1 |
| AUAGUAAG*UACAAGC*GAAUUG*CUAC*GCGCAGCCGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGUAA*ACAAG*AACU*UA*CGCA | 1 |
| UAUUAA*ACAAG*UAGU*UA*CGUA | 1 |
| UAGUAA*ACAAG*AAUU*UA*CGCA | 1 |
Release history
| Release | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|
| Date | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-tWH-cWW-F-F-cWW-tWH-cSH-F-cWW-F-F-tSS-cWW-F-F-F-tHW-cWW-cWW-F-F-F
- Heat map statistics
- Min 0.10 | Avg 0.08 | Max 0.14
Coloring options: