J7_4XEJ_003
3D structure
- PDB id
- 4XEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IRES bound to bacterial Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAAAU*AG*UGAG*CGAGCGCG*CGAGAC*GG*CGGUAG
- Length
- 34 nucleotides
- Bulged bases
- 4XEJ|1|B23S|A|945, 4XEJ|1|B23S|C|974|||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4XEJ|1|B23S|C|817
4XEJ|1|B23S|G|818
4XEJ|1|B23S|A|819
4XEJ|1|B23S|A|820
4XEJ|1|B23S|A|821
4XEJ|1|B23S|U|822
*
4XEJ|1|B23S|A|835
4XEJ|1|B23S|G|836
*
4XEJ|1|B23S|U|943
4XEJ|1|B23S|G|944
4XEJ|1|B23S|A|945
4XEJ|1|B23S|G|946
*
4XEJ|1|B23S|C|971
4XEJ|1|B23S|G|972
4XEJ|1|B23S|A|973
4XEJ|1|B23S|G|974
4XEJ|1|B23S|C|974|||A
4XEJ|1|B23S|G|975
4XEJ|1|B23S|C|976
4XEJ|1|B23S|G|977
*
4XEJ|1|B23S|C|986
4XEJ|1|B23S|G|987
4XEJ|1|B23S|A|988
4XEJ|1|B23S|G|989
4XEJ|1|B23S|A|990
4XEJ|1|B23S|C|991
*
4XEJ|1|B23S|G|1163
4XEJ|1|B23S|G|1164
*
4XEJ|1|B23S|C|1185
4XEJ|1|B23S|G|1186
4XEJ|1|B23S|G|1187
4XEJ|1|B23S|U|1188
4XEJ|1|B23S|A|1189
4XEJ|1|B23S|G|1190
Current chains
- Chain B23S
- 23S ribosomal RNA
Nearby chains
- Chain B5S
- 5S ribosomal RNA; 5S rRNA
- Chain BL15
- 50S ribosomal protein L15
- Chain BL20
- 50S ribosomal protein L20
- Chain BL21
- 50S ribosomal protein L21
- Chain BL30
- 50S ribosomal protein L30
- Chain BL35
- 50S ribosomal protein L35
Coloring options: