J7_5AKA_001
3D structure
- PDB id
- 5AKA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EM structure of ribosome-SRP-FtsY complex in closed state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
- Length
- 35 nucleotides
- Bulged bases
- 5AKA|1|B|C|2021
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5AKA|1|B|C|8
5AKA|1|B|G|9
5AKA|1|B|A|10
5AKA|1|B|C|11
5AKA|1|B|U|12
5AKA|1|B|A|13
5AKA|1|B|A|14
5AKA|1|B|G|15
*
5AKA|1|B|U|525
5AKA|1|B|A|526
5AKA|1|B|C|527
5AKA|1|B|A|528
5AKA|1|B|A|529
5AKA|1|B|G|530
5AKA|1|B|C|531
*
5AKA|1|B|G|2018
5AKA|1|B|A|2019
5AKA|1|B|A|2020
5AKA|1|B|C|2021
5AKA|1|B|U|2022
5AKA|1|B|C|2023
*
5AKA|1|B|G|2040
5AKA|1|B|U|2041
5AKA|1|B|A|2042
5AKA|1|B|C|2043
*
5AKA|1|B|G|2625
5AKA|1|B|C|2626
5AKA|1|B|G|2627
5AKA|1|B|C|2628
5AKA|1|B|U|2629
5AKA|1|B|G|2630
*
5AKA|1|B|C|2788
5AKA|1|B|C|2789
*
5AKA|1|B|G|2894
5AKA|1|B|G|2895
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S RIBOSOMAL PROTEIN L32
- Chain D
- 50S RIBOSOMAL PROTEIN L3
- Chain E
- 50S RIBOSOMAL PROTEIN L4
- Chain J
- 50S RIBOSOMAL PROTEIN L13
- Chain Q
- 50S RIBOSOMAL PROTEIN L20
- Chain S
- 50S RIBOSOMAL PROTEIN L22
Coloring options: