J7_5AKA_002
3D structure
- PDB id
- 5AKA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EM structure of ribosome-SRP-FtsY complex in closed state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- CGAAAG*CGC*GACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 33 nucleotides
- Bulged bases
- 5AKA|1|B|A|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5AKA|1|B|C|817
5AKA|1|B|G|818
5AKA|1|B|A|819
5AKA|1|B|A|820
5AKA|1|B|A|821
5AKA|1|B|G|822
*
5AKA|1|B|C|835
5AKA|1|B|G|836
5AKA|1|B|C|837
*
5AKA|1|B|G|942
5AKA|1|B|A|943
5AKA|1|B|C|944
5AKA|1|B|A|945
5AKA|1|B|C|946
*
5AKA|1|B|G|971
5AKA|1|B|A|972
5AKA|1|B|A|973
5AKA|1|B|G|974
5AKA|1|B|A|975
5AKA|1|B|G|976
*
5AKA|1|B|C|987
5AKA|1|B|A|988
5AKA|1|B|G|989
5AKA|1|B|A|990
5AKA|1|B|C|991
*
5AKA|1|B|G|1163
5AKA|1|B|C|1164
*
5AKA|1|B|G|1185
5AKA|1|B|G|1186
5AKA|1|B|G|1187
5AKA|1|B|U|1188
5AKA|1|B|A|1189
5AKA|1|B|G|1190
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S RIBOSOMAL PROTEIN L35
- Chain A
- 5S ribosomal RNA; 5S rRNA
- Chain L
- 50S RIBOSOMAL PROTEIN L15
- Chain Q
- 50S RIBOSOMAL PROTEIN L20
- Chain R
- 50S RIBOSOMAL PROTEIN L21
- Chain Y
- 50S RIBOSOMAL PROTEIN L30
Coloring options: