J7_5D8B_002

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

5D8B|1|VC|A|945, 5D8B|1|VC|C|974|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5D8B|1|VC|C|817
5D8B|1|VC|G|818
5D8B|1|VC|A|819
5D8B|1|VC|A|820
5D8B|1|VC|A|821
5D8B|1|VC|U|822
*
5D8B|1|VC|A|835
5D8B|1|VC|G|836
*
5D8B|1|VC|U|943
5D8B|1|VC|G|944
5D8B|1|VC|A|945
5D8B|1|VC|G|946
*
5D8B|1|VC|C|971
5D8B|1|VC|G|972
5D8B|1|VC|A|973
5D8B|1|VC|G|974|||A
5D8B|1|VC|C|974|||B
5D8B|1|VC|G|975
5D8B|1|VC|C|976
*
5D8B|1|VC|G|987
5D8B|1|VC|A|988
5D8B|1|VC|G|989
5D8B|1|VC|A|990
5D8B|1|VC|C|991
*
5D8B|1|VC|G|1163
5D8B|1|VC|G|1164
*
5D8B|1|VC|C|1185
5D8B|1|VC|G|1186
5D8B|1|VC|G|1187
5D8B|1|VC|U|1188
5D8B|1|VC|A|1189
5D8B|1|VC|G|1190

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain BA

50S ribosomal protein L35

Chain J

50S ribosomal protein L15

Chain O

50S ribosomal protein L20

Chain P

50S ribosomal protein L21

Chain WC

5S ribosomal RNA; 5S rRNA

Chain X

50S ribosomal protein L30