J7_5DM6_001

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUAGUAAG*UACAAGC*GAAUUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

5DM6|1|X|G|530, 5DM6|1|X|U|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DM6|1|X|A|8
5DM6|1|X|U|9
5DM6|1|X|A|10
5DM6|1|X|G|11
5DM6|1|X|U|12
5DM6|1|X|A|13
5DM6|1|X|A|14
5DM6|1|X|G|15
*
5DM6|1|X|U|525
5DM6|1|X|A|526
5DM6|1|X|C|527
5DM6|1|X|A|528
5DM6|1|X|A|529
5DM6|1|X|G|530
5DM6|1|X|C|531
*
5DM6|1|X|G|2018
5DM6|1|X|A|2019
5DM6|1|X|A|2020
5DM6|1|X|U|2021
5DM6|1|X|U|2022
5DM6|1|X|G|2023
*
5DM6|1|X|C|2040
5DM6|1|X|U|2041
5DM6|1|X|A|2042
5DM6|1|X|C|2043
*
5DM6|1|X|G|2625
5DM6|1|X|C|2626
5DM6|1|X|G|2627
5DM6|1|X|C|2628
5DM6|1|X|A|2629
5DM6|1|X|G|2630
*
5DM6|1|X|C|2788
5DM6|1|X|C|2789
*
5DM6|1|X|G|2893
5DM6|1|X|U|2894

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32