J7_5DM6_002
3D structure
- PDB id
- 5DM6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAAU*AG*UGAG*CGAGAG*CAGAC*GA*UGGUAG
- Length
- 31 nucleotides
- Bulged bases
- 5DM6|1|X|A|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5DM6|1|X|C|817
5DM6|1|X|G|818
5DM6|1|X|A|819
5DM6|1|X|A|820
5DM6|1|X|A|821
5DM6|1|X|U|822
*
5DM6|1|X|A|835
5DM6|1|X|G|836
*
5DM6|1|X|U|943
5DM6|1|X|G|944
5DM6|1|X|A|945
5DM6|1|X|G|946
*
5DM6|1|X|C|971
5DM6|1|X|G|972
5DM6|1|X|A|973
5DM6|1|X|G|974
5DM6|1|X|A|975
5DM6|1|X|G|976
*
5DM6|1|X|C|987
5DM6|1|X|A|988
5DM6|1|X|G|989
5DM6|1|X|A|990
5DM6|1|X|C|991
*
5DM6|1|X|G|1163
5DM6|1|X|A|1164
*
5DM6|1|X|U|1185
5DM6|1|X|G|1186
5DM6|1|X|G|1187
5DM6|1|X|U|1188
5DM6|1|X|A|1189
5DM6|1|X|G|1190
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain I
- 50S ribosomal protein L15
- Chain N
- 50S ribosomal protein L20
- Chain O
- 50S ribosomal protein L21
- Chain W
- 50S ribosomal protein L30
- Chain Y
- 5S ribosomal RNA; 5S rRNA
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