J7_5HCR_002
3D structure
- PDB id
- 5HCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG
- Length
- 32 nucleotides
- Bulged bases
- 5HCR|1|1A|A|989, 5HCR|1|1A|C|1019
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5HCR|1|1A|C|863
5HCR|1|1A|G|864
5HCR|1|1A|A|865
5HCR|1|1A|A|866
5HCR|1|1A|A|867
5HCR|1|1A|U|868
*
5HCR|1|1A|A|881
5HCR|1|1A|G|882
*
5HCR|1|1A|U|987
5HCR|1|1A|G|988
5HCR|1|1A|A|989
5HCR|1|1A|G|990
*
5HCR|1|1A|C|1015
5HCR|1|1A|G|1016
5HCR|1|1A|A|1017
5HCR|1|1A|G|1018
5HCR|1|1A|C|1019
5HCR|1|1A|G|1020
5HCR|1|1A|C|1021
*
5HCR|1|1A|G|1032
5HCR|1|1A|A|1033
5HCR|1|1A|G|1034
5HCR|1|1A|A|1035
5HCR|1|1A|C|1036
*
5HCR|1|1A|G|1208
5HCR|1|1A|G|1209
*
5HCR|1|1A|C|1229
5HCR|1|1A|G|1230
5HCR|1|1A|G|1231
5HCR|1|1A|U|1232
5HCR|1|1A|A|1233
5HCR|1|1A|G|1234
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 13
- 50S ribosomal protein L30
- Chain 18
- 50S ribosomal protein L35
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1P
- 50S ribosomal protein L15
- Chain 1U
- 50S ribosomal protein L20
- Chain 1V
- 50S ribosomal protein L21
Coloring options: