J7_5IMR_002
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG
- Length
- 32 nucleotides
- Bulged bases
- 5IMR|1|D|A|945, 5IMR|1|D|C|974|||A, 5IMR|1|D|G|989
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5IMR|1|D|C|817
5IMR|1|D|G|818
5IMR|1|D|A|819
5IMR|1|D|A|820
5IMR|1|D|A|821
5IMR|1|D|U|822
*
5IMR|1|D|A|835
5IMR|1|D|G|836
*
5IMR|1|D|U|943
5IMR|1|D|G|944
5IMR|1|D|A|945
5IMR|1|D|G|946
*
5IMR|1|D|C|971
5IMR|1|D|G|972
5IMR|1|D|A|973
5IMR|1|D|G|974
5IMR|1|D|C|974|||A
5IMR|1|D|G|975
5IMR|1|D|C|976
*
5IMR|1|D|G|987
5IMR|1|D|A|988
5IMR|1|D|G|989
5IMR|1|D|A|990
5IMR|1|D|C|991
*
5IMR|1|D|G|1163
5IMR|1|D|G|1164
*
5IMR|1|D|C|1185
5IMR|1|D|G|1186
5IMR|1|D|G|1187
5IMR|1|D|U|1188
5IMR|1|D|A|1189
5IMR|1|D|G|1190
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain E
- 5S ribosomal RNA; 5S rRNA
- Chain h
- 50S ribosomal protein L15
- Chain m
- 50S ribosomal protein L20
- Chain n
- 50S ribosomal protein L21
- Chain u
- 50S ribosomal protein L30
- Chain z
- 50S ribosomal protein L35
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