J7_5IT8_003

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

5IT8|1|DA|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IT8|1|DA|C|8
5IT8|1|DA|G|9
5IT8|1|DA|A|10
5IT8|1|DA|C|11
5IT8|1|DA|U|12
5IT8|1|DA|A|13
5IT8|1|DA|A|14
5IT8|1|DA|G|15
*
5IT8|1|DA|U|525
5IT8|1|DA|A|526
5IT8|1|DA|C|527
5IT8|1|DA|A|528
5IT8|1|DA|A|529
5IT8|1|DA|G|530
5IT8|1|DA|C|531
*
5IT8|1|DA|G|2018
5IT8|1|DA|A|2019
5IT8|1|DA|A|2020
5IT8|1|DA|C|2021
5IT8|1|DA|U|2022
5IT8|1|DA|C|2023
*
5IT8|1|DA|G|2040
5IT8|1|DA|U|2041
5IT8|1|DA|A|2042
5IT8|1|DA|C|2043
*
5IT8|1|DA|G|2625
5IT8|1|DA|C|2626
5IT8|1|DA|G|2627
5IT8|1|DA|C|2628
5IT8|1|DA|U|2629
5IT8|1|DA|G|2630
*
5IT8|1|DA|C|2788
5IT8|1|DA|C|2789
*
5IT8|1|DA|G|2894
5IT8|1|DA|G|2895

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D1

50S ribosomal protein L32

Chain DD

50S ribosomal protein L3

Chain DK

50S ribosomal protein L13

Chain DR

50S ribosomal protein L20

Chain DT

50S ribosomal protein L22