J7_5IT8_004
3D structure
- PDB id
- 5IT8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution structure of the Escherichia coli ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- CGAAAG*CGC*GACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 33 nucleotides
- Bulged bases
- 5IT8|1|DA|A|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5IT8|1|DA|C|817
5IT8|1|DA|G|818
5IT8|1|DA|A|819
5IT8|1|DA|A|820
5IT8|1|DA|A|821
5IT8|1|DA|G|822
*
5IT8|1|DA|C|835
5IT8|1|DA|G|836
5IT8|1|DA|C|837
*
5IT8|1|DA|G|942
5IT8|1|DA|A|943
5IT8|1|DA|C|944
5IT8|1|DA|A|945
5IT8|1|DA|C|946
*
5IT8|1|DA|G|971
5IT8|1|DA|A|972
5IT8|1|DA|A|973
5IT8|1|DA|G|974
5IT8|1|DA|A|975
5IT8|1|DA|G|976
*
5IT8|1|DA|C|987
5IT8|1|DA|A|988
5IT8|1|DA|G|989
5IT8|1|DA|A|990
5IT8|1|DA|C|991
*
5IT8|1|DA|G|1163
5IT8|1|DA|C|1164
*
5IT8|1|DA|G|1185
5IT8|1|DA|G|1186
5IT8|1|DA|G|1187
5IT8|1|DA|U|1188
5IT8|1|DA|A|1189
5IT8|1|DA|G|1190
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D0
- 50S ribosomal protein L30
- Chain D4
- 50S ribosomal protein L35
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DM
- 50S ribosomal protein L15
- Chain DR
- 50S ribosomal protein L20
- Chain DS
- 50S ribosomal protein L21
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