J7_5J7L_003

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

5J7L|1|DA|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J7_59754.1

Basepair signature

cWW-F-cWW-tHW-F-cWW-F-cSH-F-cWW-F-F-tSS-cWW-F-F-F-tHW-F-cWW-cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

5J7L|1|DA|C|8
5J7L|1|DA|G|9
5J7L|1|DA|A|10
5J7L|1|DA|C|11
5J7L|1|DA|U|12
5J7L|1|DA|A|13
5J7L|1|DA|A|14
5J7L|1|DA|G|15
*
5J7L|1|DA|U|525
5J7L|1|DA|A|526
5J7L|1|DA|C|527
5J7L|1|DA|A|528
5J7L|1|DA|A|529
5J7L|1|DA|G|530
5J7L|1|DA|C|531
*
5J7L|1|DA|G|2018
5J7L|1|DA|A|2019
5J7L|1|DA|A|2020
5J7L|1|DA|C|2021
5J7L|1|DA|U|2022
5J7L|1|DA|C|2023
*
5J7L|1|DA|G|2040
5J7L|1|DA|U|2041
5J7L|1|DA|A|2042
5J7L|1|DA|C|2043
*
5J7L|1|DA|G|2625
5J7L|1|DA|C|2626
5J7L|1|DA|G|2627
5J7L|1|DA|C|2628
5J7L|1|DA|U|2629
5J7L|1|DA|G|2630
*
5J7L|1|DA|C|2788
5J7L|1|DA|C|2789
*
5J7L|1|DA|G|2894
5J7L|1|DA|G|2895

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D1

50S ribosomal protein L32

Chain DD

50S ribosomal protein L3

Chain DK

50S ribosomal protein L13

Chain DR

50S ribosomal protein L20

Chain DT

50S ribosomal protein L22