J7_5J7L_004

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

5J7L|1|DA|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J7_43074.1

Basepair signature

cWW-tSH-tHW-cSH-tHH-tHS-F-cWW-cHS-cWW-F-cWW-F-cWW-tSH-F-F-F-F-cWW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

5J7L|1|DA|C|817
5J7L|1|DA|G|818
5J7L|1|DA|A|819
5J7L|1|DA|A|820
5J7L|1|DA|A|821
5J7L|1|DA|G|822
*
5J7L|1|DA|C|835
5J7L|1|DA|G|836
5J7L|1|DA|C|837
5J7L|1|DA|C|838
*
5J7L|1|DA|G|940
5J7L|1|DA|A|941
5J7L|1|DA|G|942
5J7L|1|DA|A|943
5J7L|1|DA|C|944
5J7L|1|DA|A|945
5J7L|1|DA|C|946
*
5J7L|1|DA|G|971
5J7L|1|DA|A|972
5J7L|1|DA|A|973
5J7L|1|DA|G|974
5J7L|1|DA|A|975
5J7L|1|DA|G|976
*
5J7L|1|DA|C|987
5J7L|1|DA|A|988
5J7L|1|DA|G|989
5J7L|1|DA|A|990
5J7L|1|DA|C|991
*
5J7L|1|DA|G|1163
5J7L|1|DA|C|1164
*
5J7L|1|DA|G|1185
5J7L|1|DA|G|1186
5J7L|1|DA|G|1187
5J7L|1|DA|U|1188
5J7L|1|DA|A|1189
5J7L|1|DA|G|1190

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D0

50S ribosomal protein L30

Chain D4

50S ribosomal protein L35

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DM

50S ribosomal protein L15

Chain DR

50S ribosomal protein L20

Chain DS

50S ribosomal protein L21