#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6break 7 8 9 10break 11 12 13 14 15 16break 17 18 19 20 21 22break 23 24 25 26 27break 28 29break 30 31 32 33 34 351-352-343-93-334-195-186-76-149-129-1310-1113-3416-1720-2621-2421-2522-2327-2829-3032-33
1 J7_5J7L_0045J7L0.00001DA LSU rRNAC817G818A819A820A821G822*C835G836C837C838*G940A941G942A943C944C946*G971A972A973G974A975G976*C987A988G989A990C991*G1163C1164*G1185G1186G1187U1188A1189G1190cWWtSHncSstHWtHHtHScWWcHSncWWcWWcWWtSHtHScWWcWWcWWcSH
2 J7_4V9F_0014V9F0.121110 LSU rRNAC910G911A912A913A914C915*G928A929C930C931*G1039A1040U1041U1042C1043G1045*C1069A1070G1071G1072A1073G1074*C1085A1086G1087A1088G1089*C1267C1268*G1290A1291G1292U1293A1294G1295cWWtSHncSstHWtHHtHScWWcHSncWBcWWncSscWWtSHtHScWWcWWcWWcSH

3D structures

Complete motif including flanking bases
SequenceCounts
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGACGCGGGUAG1
CGAAAC*GACC*GAUUCCG*CAGGAG*CAGAGCCGAGUAG1
Non-Watson-Crick part of the motif
SequenceCounts
GAAA*GC*AGACA*AAGA*AGAGGUA1
GAAA*AC*AUUCC*AGGA*AGAAGUA1

Release history

Release3.23.33.43.53.63.73.83.93.103.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.97
Date2018-02-092018-03-082018-04-062018-05-042018-06-012018-06-292018-07-272018-08-242018-09-212018-10-192018-11-162018-12-142019-01-112019-02-082019-03-082019-04-052019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-052022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-09-142022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-082023-12-062024-01-032024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-142024-09-112024-10-092024-11-062024-12-042025-01-012025-01-292025-02-262025-03-262025-04-232025-05-21
StatusNew id, no parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (2)
  • Basepair signature
    cWW-tSH-tHW-cSH-tHH-tHS-F-cWW-cHS-cWW-F-cWW-F-cWW-tSH-F-F-F-F-cWW-F-F-cWW
    Heat map statistics
    Min 0.12 | Avg 0.06 | Max 0.12
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.1196 s