J7_5J8B_001
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU
- Length
- 35 nucleotides
- Bulged bases
- 5J8B|1|A|G|554, 5J8B|1|A|C|2042
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5J8B|1|A|A|7
5J8B|1|A|U|8
5J8B|1|A|G|9
5J8B|1|A|G|10
5J8B|1|A|U|11
5J8B|1|A|A|12
5J8B|1|A|A|13
5J8B|1|A|G|14
*
5J8B|1|A|U|549
5J8B|1|A|A|550
5J8B|1|A|C|551
5J8B|1|A|A|552
5J8B|1|A|A|553
5J8B|1|A|G|554
5J8B|1|A|C|555
*
5J8B|1|A|G|2039
5J8B|1|A|A|2040
5J8B|1|A|A|2041
5J8B|1|A|C|2042
5J8B|1|A|U|2043
5J8B|1|A|G|2044
*
5J8B|1|A|C|2061
5J8B|1|A|U|2062
5J8B|1|A|A|2063
5J8B|1|A|C|2064
*
5J8B|1|A|G|2636
5J8B|1|A|C|2637
5J8B|1|A|G|2638
5J8B|1|A|C|2639
5J8B|1|A|A|2640
5J8B|1|A|G|2641
*
5J8B|1|A|C|2800
5J8B|1|A|C|2801
*
5J8B|1|A|G|2902
5J8B|1|A|U|2903
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 5
- 50S ribosomal protein L32
- Chain E
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L13
- Chain U
- 50S ribosomal protein L20
- Chain W
- 50S ribosomal protein L22
Coloring options: