J7_5JUP_001
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 5JUP|1|B|G|1116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUP|1|B|C|949
5JUP|1|B|G|950
5JUP|1|B|A|951
5JUP|1|B|A|952
5JUP|1|B|G|953
5JUP|1|B|U|954
*
5JUP|1|B|A|967
5JUP|1|B|G|968
*
5JUP|1|B|U|1114
5JUP|1|B|G|1115
5JUP|1|B|G|1116
5JUP|1|B|G|1117
*
5JUP|1|B|C|1141
5JUP|1|B|G|1142
5JUP|1|B|A|1143
5JUP|1|B|U|1144
5JUP|1|B|G|1145
5JUP|1|B|C|1146
*
5JUP|1|B|G|1157
5JUP|1|B|A|1158
5JUP|1|B|A|1159
5JUP|1|B|C|1160
5JUP|1|B|G|1161
*
5JUP|1|B|C|1338
5JUP|1|B|C|1339
*
5JUP|1|B|G|1365
5JUP|1|B|A|1366
5JUP|1|B|G|1367
5JUP|1|B|U|1368
5JUP|1|B|A|1369
5JUP|1|B|G|1370
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain D
- 5S ribosomal RNA; 5S rRNA
- Chain FA
- uL15 (yeast L28)
- Chain GA
- eL29 (yeast L29)
- Chain H
- uL4 (yeast L4)
- Chain JA
- eL32 (yeast L32)
- Chain K
- uL30 (yeast L7)
- Chain KA
- eL33 (yeast L33)
- Chain Q
- eL13 (yeast L13)
- Chain V
- eL18 (yeast L18)
- Chain Y
- eL21 (yeast L21)
Coloring options: