J7_5KCR_002
3D structure
- PDB id
- 5KCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAAAG*CGC*GACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 33 nucleotides
- Bulged bases
- 5KCR|1|1A|A|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5KCR|1|1A|C|817
5KCR|1|1A|G|818
5KCR|1|1A|A|819
5KCR|1|1A|A|820
5KCR|1|1A|A|821
5KCR|1|1A|G|822
*
5KCR|1|1A|C|835
5KCR|1|1A|G|836
5KCR|1|1A|C|837
*
5KCR|1|1A|G|942
5KCR|1|1A|A|943
5KCR|1|1A|C|944
5KCR|1|1A|A|945
5KCR|1|1A|C|946
*
5KCR|1|1A|G|971
5KCR|1|1A|A|972
5KCR|1|1A|A|973
5KCR|1|1A|G|974
5KCR|1|1A|A|975
5KCR|1|1A|G|976
*
5KCR|1|1A|C|987
5KCR|1|1A|A|988
5KCR|1|1A|G|989
5KCR|1|1A|A|990
5KCR|1|1A|C|991
*
5KCR|1|1A|G|1163
5KCR|1|1A|C|1164
*
5KCR|1|1A|G|1185
5KCR|1|1A|G|1186
5KCR|1|1A|G|1187
5KCR|1|1A|U|1188
5KCR|1|1A|A|1189
5KCR|1|1A|G|1190
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 13
- 50S ribosomal protein L30
- Chain 18
- 50S ribosomal protein L35
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1P
- 50S ribosomal protein L15
- Chain 1U
- 50S ribosomal protein L20
- Chain 1V
- 50S ribosomal protein L21
Coloring options: