J7_5KPS_001

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

5KPS|1|28|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KPS|1|28|C|8
5KPS|1|28|G|9
5KPS|1|28|A|10
5KPS|1|28|C|11
5KPS|1|28|U|12
5KPS|1|28|A|13
5KPS|1|28|A|14
5KPS|1|28|G|15
*
5KPS|1|28|U|525
5KPS|1|28|A|526
5KPS|1|28|C|527
5KPS|1|28|A|528
5KPS|1|28|A|529
5KPS|1|28|G|530
5KPS|1|28|C|531
*
5KPS|1|28|G|2018
5KPS|1|28|A|2019
5KPS|1|28|A|2020
5KPS|1|28|C|2021
5KPS|1|28|U|2022
5KPS|1|28|C|2023
*
5KPS|1|28|G|2040
5KPS|1|28|U|2041
5KPS|1|28|A|2042
5KPS|1|28|C|2043
*
5KPS|1|28|G|2625
5KPS|1|28|C|2626
5KPS|1|28|G|2627
5KPS|1|28|C|2628
5KPS|1|28|U|2629
5KPS|1|28|G|2630
*
5KPS|1|28|C|2788
5KPS|1|28|C|2789
*
5KPS|1|28|G|2894
5KPS|1|28|G|2895

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L32

Chain C

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22