3D structure

PDB id
5LZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)
Experimental method
ELECTRON MICROSCOPY
Resolution
5.3 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
5LZB|1|A|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5LZB|1|A|C|817
5LZB|1|A|G|818
5LZB|1|A|A|819
5LZB|1|A|A|820
5LZB|1|A|A|821
5LZB|1|A|G|822
*
5LZB|1|A|C|835
5LZB|1|A|G|836
5LZB|1|A|C|837
5LZB|1|A|C|838
*
5LZB|1|A|G|940
5LZB|1|A|A|941
5LZB|1|A|G|942
5LZB|1|A|A|943
5LZB|1|A|C|944
5LZB|1|A|A|945
5LZB|1|A|C|946
*
5LZB|1|A|G|971
5LZB|1|A|A|972
5LZB|1|A|A|973
5LZB|1|A|G|974
5LZB|1|A|A|975
5LZB|1|A|G|976
*
5LZB|1|A|C|987
5LZB|1|A|A|988
5LZB|1|A|G|989
5LZB|1|A|A|990
5LZB|1|A|C|991
*
5LZB|1|A|G|1163
5LZB|1|A|C|1164
*
5LZB|1|A|G|1185
5LZB|1|A|G|1186
5LZB|1|A|G|1187
5LZB|1|A|U|1188
5LZB|1|A|A|1189
5LZB|1|A|G|1190

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 3
50S ribosomal protein L35
Chain B
5S ribosomal RNA; 5S rRNA
Chain L
50S ribosomal protein L15
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21
Chain Z
50S ribosomal protein L30

Coloring options:

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