J7_5LZE_001

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

5LZE|1|A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZE|1|A|C|8
5LZE|1|A|G|9
5LZE|1|A|A|10
5LZE|1|A|C|11
5LZE|1|A|U|12
5LZE|1|A|A|13
5LZE|1|A|A|14
5LZE|1|A|G|15
*
5LZE|1|A|U|525
5LZE|1|A|A|526
5LZE|1|A|C|527
5LZE|1|A|A|528
5LZE|1|A|A|529
5LZE|1|A|G|530
5LZE|1|A|C|531
*
5LZE|1|A|G|2018
5LZE|1|A|A|2019
5LZE|1|A|A|2020
5LZE|1|A|C|2021
5LZE|1|A|U|2022
5LZE|1|A|C|2023
*
5LZE|1|A|G|2040
5LZE|1|A|U|2041
5LZE|1|A|A|2042
5LZE|1|A|C|2043
*
5LZE|1|A|G|2625
5LZE|1|A|C|2626
5LZE|1|A|G|2627
5LZE|1|A|C|2628
5LZE|1|A|U|2629
5LZE|1|A|G|2630
*
5LZE|1|A|C|2788
5LZE|1|A|C|2789
*
5LZE|1|A|G|2894
5LZE|1|A|G|2895

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22