3D structure

PDB id
5LZE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
5LZE|1|A|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5LZE|1|A|C|817
5LZE|1|A|G|818
5LZE|1|A|A|819
5LZE|1|A|A|820
5LZE|1|A|A|821
5LZE|1|A|G|822
*
5LZE|1|A|C|835
5LZE|1|A|G|836
5LZE|1|A|C|837
5LZE|1|A|C|838
*
5LZE|1|A|G|940
5LZE|1|A|A|941
5LZE|1|A|G|942
5LZE|1|A|A|943
5LZE|1|A|C|944
5LZE|1|A|A|945
5LZE|1|A|C|946
*
5LZE|1|A|G|971
5LZE|1|A|A|972
5LZE|1|A|A|973
5LZE|1|A|G|974
5LZE|1|A|A|975
5LZE|1|A|G|976
*
5LZE|1|A|C|987
5LZE|1|A|A|988
5LZE|1|A|G|989
5LZE|1|A|A|990
5LZE|1|A|C|991
*
5LZE|1|A|G|1163
5LZE|1|A|C|1164
*
5LZE|1|A|G|1185
5LZE|1|A|G|1186
5LZE|1|A|G|1187
5LZE|1|A|U|1188
5LZE|1|A|A|1189
5LZE|1|A|G|1190

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 3
50S ribosomal protein L35
Chain B
5S ribosomal RNA; 5S rRNA
Chain L
50S ribosomal protein L15
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21
Chain Z
50S ribosomal protein L30

Coloring options:

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