J7_5LZF_001

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

5LZF|1|A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZF|1|A|C|8
5LZF|1|A|G|9
5LZF|1|A|A|10
5LZF|1|A|C|11
5LZF|1|A|U|12
5LZF|1|A|A|13
5LZF|1|A|A|14
5LZF|1|A|G|15
*
5LZF|1|A|U|525
5LZF|1|A|A|526
5LZF|1|A|C|527
5LZF|1|A|A|528
5LZF|1|A|A|529
5LZF|1|A|G|530
5LZF|1|A|C|531
*
5LZF|1|A|G|2018
5LZF|1|A|A|2019
5LZF|1|A|A|2020
5LZF|1|A|C|2021
5LZF|1|A|U|2022
5LZF|1|A|C|2023
*
5LZF|1|A|G|2040
5LZF|1|A|U|2041
5LZF|1|A|A|2042
5LZF|1|A|C|2043
*
5LZF|1|A|G|2625
5LZF|1|A|C|2626
5LZF|1|A|G|2627
5LZF|1|A|C|2628
5LZF|1|A|U|2629
5LZF|1|A|G|2630
*
5LZF|1|A|C|2788
5LZF|1|A|C|2789
*
5LZF|1|A|G|2894
5LZF|1|A|G|2895

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22