J7_5MC6_001
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 5MC6|1|BQ|G|1116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5MC6|1|BQ|C|949
5MC6|1|BQ|G|950
5MC6|1|BQ|A|951
5MC6|1|BQ|A|952
5MC6|1|BQ|G|953
5MC6|1|BQ|U|954
*
5MC6|1|BQ|A|967
5MC6|1|BQ|G|968
*
5MC6|1|BQ|U|1114
5MC6|1|BQ|G|1115
5MC6|1|BQ|G|1116
5MC6|1|BQ|G|1117
*
5MC6|1|BQ|C|1141
5MC6|1|BQ|G|1142
5MC6|1|BQ|A|1143
5MC6|1|BQ|U|1144
5MC6|1|BQ|G|1145
5MC6|1|BQ|C|1146
*
5MC6|1|BQ|G|1157
5MC6|1|BQ|A|1158
5MC6|1|BQ|A|1159
5MC6|1|BQ|C|1160
5MC6|1|BQ|G|1161
*
5MC6|1|BQ|C|1338
5MC6|1|BQ|C|1339
*
5MC6|1|BQ|G|1365
5MC6|1|BQ|A|1366
5MC6|1|BQ|G|1367
5MC6|1|BQ|U|1368
5MC6|1|BQ|A|1369
5MC6|1|BQ|G|1370
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AJ
- 60S ribosomal protein L13-A
- Chain AR
- 60S ribosomal protein L28
- Chain AV
- 60S ribosomal protein L29
- Chain BB
- 60S ribosomal protein L18-A
- Chain BE
- 60S ribosomal protein L4-A
- Chain BG
- 60S ribosomal protein L32
- Chain BJ
- 60S ribosomal protein L21-A
- Chain BK
- 60S ribosomal protein L33-A
- Chain BO
- 60S ribosomal protein L7-A
- Chain BR
- 5S ribosomal RNA; 5S rRNA
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