J7_5NDK_002
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG
- Length
- 32 nucleotides
- Bulged bases
- 5NDK|1|14|A|992, 5NDK|1|14|C|1022
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NDK|1|14|C|866
5NDK|1|14|G|867
5NDK|1|14|A|868
5NDK|1|14|A|869
5NDK|1|14|A|870
5NDK|1|14|U|871
*
5NDK|1|14|A|884
5NDK|1|14|G|885
*
5NDK|1|14|U|990
5NDK|1|14|G|991
5NDK|1|14|A|992
5NDK|1|14|G|993
*
5NDK|1|14|C|1018
5NDK|1|14|G|1019
5NDK|1|14|A|1020
5NDK|1|14|G|1021
5NDK|1|14|C|1022
5NDK|1|14|G|1023
5NDK|1|14|C|1024
*
5NDK|1|14|G|1035
5NDK|1|14|A|1036
5NDK|1|14|G|1037
5NDK|1|14|A|1038
5NDK|1|14|C|1039
*
5NDK|1|14|G|1212
5NDK|1|14|G|1213
*
5NDK|1|14|C|1233
5NDK|1|14|G|1234
5NDK|1|14|G|1235
5NDK|1|14|U|1236
5NDK|1|14|A|1237
5NDK|1|14|G|1238
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 1J
- 5S ribosomal RNA; 5S rRNA
- Chain 35
- 50S ribosomal protein L15
- Chain 85
- 50S ribosomal protein L20
- Chain 95
- 50S ribosomal protein L21
- Chain H5
- 50S ribosomal protein L30
- Chain M5
- 50S ribosomal protein L35
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