J7_5NDK_003
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU
- Length
- 35 nucleotides
- Bulged bases
- 5NDK|1|1H|G|557, 5NDK|1|1H|C|2046
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NDK|1|1H|A|8
5NDK|1|1H|U|9
5NDK|1|1H|G|10
5NDK|1|1H|G|11
5NDK|1|1H|U|12
5NDK|1|1H|A|13
5NDK|1|1H|A|14
5NDK|1|1H|G|15
*
5NDK|1|1H|U|552
5NDK|1|1H|A|553
5NDK|1|1H|C|554
5NDK|1|1H|A|555
5NDK|1|1H|A|556
5NDK|1|1H|G|557
5NDK|1|1H|C|558
*
5NDK|1|1H|G|2043
5NDK|1|1H|A|2044
5NDK|1|1H|A|2045
5NDK|1|1H|C|2046
5NDK|1|1H|U|2047
5NDK|1|1H|G|2048
*
5NDK|1|1H|C|2065
5NDK|1|1H|U|2066
5NDK|1|1H|A|2067
5NDK|1|1H|C|2068
*
5NDK|1|1H|G|2640
5NDK|1|1H|C|2641
5NDK|1|1H|G|2642
5NDK|1|1H|C|2643
5NDK|1|1H|A|2644
5NDK|1|1H|G|2645
*
5NDK|1|1H|C|2804
5NDK|1|1H|C|2805
*
5NDK|1|1H|G|2906
5NDK|1|1H|U|2907
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 21
- 50S ribosomal protein L3
- Chain 58
- 50S ribosomal protein L13
- Chain C8
- 50S ribosomal protein L20
- Chain E8
- 50S ribosomal protein L22
- Chain N8
- 50S ribosomal protein L32
Coloring options: