J7_5NGM_001
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAAU*AG*UCAG*CGAAAG*CAGAC*GAU*AUGGUAG
- Length
- 33 nucleotides
- Bulged bases
- 5NGM|1|AA|A|989
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NGM|1|AA|C|862
5NGM|1|AA|G|863
5NGM|1|AA|A|864
5NGM|1|AA|A|865
5NGM|1|AA|A|866
5NGM|1|AA|U|867
*
5NGM|1|AA|A|880
5NGM|1|AA|G|881
*
5NGM|1|AA|U|987
5NGM|1|AA|C|988
5NGM|1|AA|A|989
5NGM|1|AA|G|990
*
5NGM|1|AA|C|1015
5NGM|1|AA|G|1016
5NGM|1|AA|A|1017
5NGM|1|AA|A|1018
5NGM|1|AA|A|1019
5NGM|1|AA|G|1020
*
5NGM|1|AA|C|1031
5NGM|1|AA|A|1032
5NGM|1|AA|G|1033
5NGM|1|AA|A|1034
5NGM|1|AA|C|1035
*
5NGM|1|AA|G|1207
5NGM|1|AA|A|1208
5NGM|1|AA|U|1209
*
5NGM|1|AA|A|1223
5NGM|1|AA|U|1224
5NGM|1|AA|G|1225
5NGM|1|AA|G|1226
5NGM|1|AA|U|1227
5NGM|1|AA|A|1228
5NGM|1|AA|G|1229
Current chains
- Chain AA
- 23S Ribosomal RNA
Nearby chains
- Chain A3
- 50S ribosomal protein L35
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AJ
- 50S ribosomal protein L15
- Chain AO
- 50S ribosomal protein L20
- Chain AP
- 50S ribosomal protein L21
- Chain AX
- 50S ribosomal protein L30
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