J7_5NJT_002
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAAAU*AG*UCAG*CGAAAG*CAGAC*GA*UGGUAG
- Length
- 31 nucleotides
- Bulged bases
- 5NJT|1|U|C|990, 5NJT|1|U|A|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NJT|1|U|C|864
5NJT|1|U|G|865
5NJT|1|U|A|866
5NJT|1|U|A|867
5NJT|1|U|A|868
5NJT|1|U|U|869
*
5NJT|1|U|A|882
5NJT|1|U|G|883
*
5NJT|1|U|U|989
5NJT|1|U|C|990
5NJT|1|U|A|991
5NJT|1|U|G|992
*
5NJT|1|U|C|1017
5NJT|1|U|G|1018
5NJT|1|U|A|1019
5NJT|1|U|A|1020
5NJT|1|U|A|1021
5NJT|1|U|G|1022
*
5NJT|1|U|C|1033
5NJT|1|U|A|1034
5NJT|1|U|G|1035
5NJT|1|U|A|1036
5NJT|1|U|C|1037
*
5NJT|1|U|G|1209
5NJT|1|U|A|1210
*
5NJT|1|U|U|1226
5NJT|1|U|G|1227
5NJT|1|U|G|1228
5NJT|1|U|U|1229
5NJT|1|U|A|1230
5NJT|1|U|G|1231
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain V
- 5S ribosomal RNA; 5S rRNA
- Chain e
- 50S ribosomal protein L15
- Chain j
- 50S ribosomal protein L20
- Chain k
- 50S ribosomal protein L21
- Chain s
- 50S ribosomal protein L35
- Chain w
- 50S ribosomal protein L30
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