J7_5NRG_001

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UUAUUAAG*UACAAGU*AUAGUA*UUAC*GCGUAG*CC*GA

Length

35 nucleotides

Bulged bases

5NRG|1|X|G|575, 5NRG|1|X|G|2048

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NRG|1|X|U|8
5NRG|1|X|U|9
5NRG|1|X|A|10
5NRG|1|X|U|11
5NRG|1|X|U|12
5NRG|1|X|A|13
5NRG|1|X|A|14
5NRG|1|X|G|15
*
5NRG|1|X|U|570
5NRG|1|X|A|571
5NRG|1|X|C|572
5NRG|1|X|A|573
5NRG|1|X|A|574
5NRG|1|X|G|575
5NRG|1|X|U|576
*
5NRG|1|X|A|2045
5NRG|1|X|U|2046
5NRG|1|X|A|2047
5NRG|1|X|G|2048
5NRG|1|X|U|2049
5NRG|1|X|A|2050
*
5NRG|1|X|U|2067
5NRG|1|X|U|2068
5NRG|1|X|A|2069
5NRG|1|X|C|2070
*
5NRG|1|X|G|2652
5NRG|1|X|C|2653
5NRG|1|X|G|2654
5NRG|1|X|U|2655
5NRG|1|X|A|2656
5NRG|1|X|G|2657
*
5NRG|1|X|C|2815
5NRG|1|X|C|2816
*
5NRG|1|X|G|2913
5NRG|1|X|A|2914

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32