J7_5T2A_001
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GCUUA*UU*AUGUAG
- Length
- 31 nucleotides
- Bulged bases
- 5T2A|1|A|G|1173, 5T2A|1|A|U|1201
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T2A|1|A|C|1000
5T2A|1|A|G|1001
5T2A|1|A|A|1002
5T2A|1|A|A|1003
5T2A|1|A|G|1004
5T2A|1|A|U|1005
*
5T2A|1|A|A|1018
5T2A|1|A|G|1019
*
5T2A|1|A|U|1171
5T2A|1|A|G|1172
5T2A|1|A|G|1173
5T2A|1|A|G|1174
*
5T2A|1|A|C|1198
5T2A|1|A|G|1199
5T2A|1|A|A|1200
5T2A|1|A|U|1201
5T2A|1|A|G|1202
5T2A|1|A|C|1203
*
5T2A|1|A|G|1214
5T2A|1|A|C|1215
5T2A|1|A|U|1216
5T2A|1|A|U|1217
5T2A|1|A|A|1218
*
5T2A|1|A|U|1408
5T2A|1|A|U|1409
*
5T2A|1|A|A|1456
5T2A|1|A|U|1457
5T2A|1|A|G|1458
5T2A|1|A|U|1459
5T2A|1|A|A|1460
5T2A|1|A|G|1461
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 5S ribosomal RNA; 5S rRNA
- Chain I
- eL18
- Chain L
- eL13
- Chain S
- eL21
- Chain Z
- uL15
- Chain b
- eL29
- Chain g
- eL32
- Chain j
- eL33
- Chain u
- uL30
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