J7_5UQ8_001
3D structure
- PDB id
- 5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GUC
- Length
- 37 nucleotides
- Bulged bases
- 5UQ8|1|A|G|530, 5UQ8|1|A|C|2021
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5UQ8|1|A|G|7
5UQ8|1|A|A|8
5UQ8|1|A|U|9
5UQ8|1|A|G|10
5UQ8|1|A|G|11
5UQ8|1|A|U|12
5UQ8|1|A|A|13
5UQ8|1|A|A|14
5UQ8|1|A|G|15
*
5UQ8|1|A|U|525
5UQ8|1|A|A|526
5UQ8|1|A|C|527
5UQ8|1|A|A|528
5UQ8|1|A|A|529
5UQ8|1|A|G|530
5UQ8|1|A|C|531
*
5UQ8|1|A|G|2018
5UQ8|1|A|A|2019
5UQ8|1|A|A|2020
5UQ8|1|A|C|2021
5UQ8|1|A|U|2022
5UQ8|1|A|G|2023
*
5UQ8|1|A|C|2040
5UQ8|1|A|U|2041
5UQ8|1|A|A|2042
5UQ8|1|A|C|2043
*
5UQ8|1|A|G|2625
5UQ8|1|A|C|2626
5UQ8|1|A|G|2627
5UQ8|1|A|C|2628
5UQ8|1|A|A|2629
5UQ8|1|A|G|2630
*
5UQ8|1|A|C|2788
5UQ8|1|A|C|2789
*
5UQ8|1|A|G|2894
5UQ8|1|A|U|2895
5UQ8|1|A|C|2896
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 5
- 50S ribosomal protein L32
- Chain E
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L13
- Chain U
- 50S ribosomal protein L20
- Chain W
- 50S ribosomal protein L22
Coloring options: