J7_5Z3G_002
3D structure
- PDB id
- 5Z3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- CGAAGUUUC*GAUAG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 37 nucleotides
- Bulged bases
- 5Z3G|1|A|G|1116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5Z3G|1|A|C|949
5Z3G|1|A|G|950
5Z3G|1|A|A|951
5Z3G|1|A|A|952
5Z3G|1|A|G|953
5Z3G|1|A|U|954
5Z3G|1|A|U|955
5Z3G|1|A|U|956
5Z3G|1|A|C|957
*
5Z3G|1|A|G|964
5Z3G|1|A|A|965
5Z3G|1|A|U|966
5Z3G|1|A|A|967
5Z3G|1|A|G|968
*
5Z3G|1|A|U|1114
5Z3G|1|A|G|1115
5Z3G|1|A|G|1116
5Z3G|1|A|G|1117
*
5Z3G|1|A|C|1141
5Z3G|1|A|G|1142
5Z3G|1|A|A|1143
5Z3G|1|A|U|1144
5Z3G|1|A|G|1145
5Z3G|1|A|C|1146
*
5Z3G|1|A|G|1157
5Z3G|1|A|A|1158
5Z3G|1|A|A|1159
5Z3G|1|A|C|1160
5Z3G|1|A|G|1161
*
5Z3G|1|A|C|1338
5Z3G|1|A|C|1339
*
5Z3G|1|A|G|1365
5Z3G|1|A|A|1366
5Z3G|1|A|G|1367
5Z3G|1|A|U|1368
5Z3G|1|A|A|1369
5Z3G|1|A|G|1370
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L4-A
- Chain J
- 60S ribosomal protein L7-A
- Chain i
- 60S ribosomal protein L32
- Chain j
- 60S ribosomal protein L33-A
Coloring options: