J7_6B4V_002
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG
- Length
- 32 nucleotides
- Bulged bases
- 6B4V|1|B|A|945, 6B4V|1|B|C|974|||B
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6B4V|1|B|C|817
6B4V|1|B|G|818
6B4V|1|B|A|819
6B4V|1|B|A|820
6B4V|1|B|A|821
6B4V|1|B|U|822
*
6B4V|1|B|A|835
6B4V|1|B|G|836
*
6B4V|1|B|U|943
6B4V|1|B|G|944
6B4V|1|B|A|945
6B4V|1|B|G|946
*
6B4V|1|B|C|971
6B4V|1|B|G|972
6B4V|1|B|A|973
6B4V|1|B|G|974|||A
6B4V|1|B|C|974|||B
6B4V|1|B|G|975
6B4V|1|B|C|976
*
6B4V|1|B|G|987
6B4V|1|B|A|988
6B4V|1|B|G|989
6B4V|1|B|A|990
6B4V|1|B|C|991
*
6B4V|1|B|G|1163
6B4V|1|B|G|1164
*
6B4V|1|B|C|1185
6B4V|1|B|G|1186
6B4V|1|B|G|1187
6B4V|1|B|U|1188
6B4V|1|B|A|1189
6B4V|1|B|G|1190
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain AA
- 50S ribosomal protein L30
- Chain C
- 5S ribosomal RNA; 5S rRNA
- Chain FA
- 50S ribosomal protein L35
- Chain M
- 50S ribosomal protein L15
- Chain R
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L21
Coloring options: