J7_6BY1_003

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6BY1|1|DA|C|527, 6BY1|1|DA|G|530, 6BY1|1|DA|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6BY1|1|DA|C|8
6BY1|1|DA|G|9
6BY1|1|DA|A|10
6BY1|1|DA|C|11
6BY1|1|DA|U|12
6BY1|1|DA|A|13
6BY1|1|DA|A|14
6BY1|1|DA|G|15
*
6BY1|1|DA|U|525
6BY1|1|DA|A|526
6BY1|1|DA|C|527
6BY1|1|DA|A|528
6BY1|1|DA|A|529
6BY1|1|DA|G|530
6BY1|1|DA|C|531
*
6BY1|1|DA|G|2018
6BY1|1|DA|A|2019
6BY1|1|DA|A|2020
6BY1|1|DA|C|2021
6BY1|1|DA|U|2022
6BY1|1|DA|C|2023
*
6BY1|1|DA|G|2040
6BY1|1|DA|U|2041
6BY1|1|DA|A|2042
6BY1|1|DA|C|2043
*
6BY1|1|DA|G|2625
6BY1|1|DA|C|2626
6BY1|1|DA|G|2627
6BY1|1|DA|C|2628
6BY1|1|DA|U|2629
6BY1|1|DA|G|2630
*
6BY1|1|DA|C|2788
6BY1|1|DA|C|2789
*
6BY1|1|DA|G|2894
6BY1|1|DA|G|2895

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L32

Chain DD

50S ribosomal protein L3

Chain DJ

50S ribosomal protein L13

Chain DQ

50S ribosomal protein L20

Chain DS

50S ribosomal protein L22